{
  "_id": "6a102cefacfb0bcc41c93751",
  "Package": "mrIML",
  "Type": "Package",
  "Title": "Multi-Response (Multivariate) Interpretable Machine Learning",
  "Version": "2.2.0",
  "Authors@R": "c(\nperson(\"Nick\", \"Fountain-Jones\", , \"nick.fountainjones@utas.edu.au\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-9248-8493\")),\nperson(\"Ryan\", \"Leadbetter\", , \"ryan.leadbetter@utas.edu.au\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-1942-3121\")),\nperson(\"Gustavo\", \"Machado\", , \"gmachad@ncsu.edu\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-7552-6144\")),\nperson(\"Chris\", \"Kozakiewicz\", role = \"aut\"),\nperson(\"Nick\", \"Clark\", role = \"aut\")\n)",
  "Description": "Builds and interprets multi-response machine learning\nmodels using 'tidymodels' syntax. Users can supply a tidy\nmodel, and 'mrIML' automates the process of fitting multiple\nresponse models to multivariate data and applying interpretable\nmachine learning techniques across them. For more details see\nFountain-Jones (2021) <doi:10.1111/1755-0998.13495> and\nFountain-Jones et al. (2024)\n<doi:10.22541/au.172676147.77148600/v1>.",
  "License": "MIT + file LICENSE",
  "LazyData": "true",
  "VignetteBuilder": "knitr, rmarkdown",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "URL": "https://github.com/nickfountainjones/mrIML",
  "BugReports": "https://github.com/nickfountainjones/mrIML/issues",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Config/Needs/website": "rmarkdown",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev",
  "Repository": "https://nickfountainjones.r-universe.dev",
  "Date/Publication": "2025-11-14 02:07:03 UTC",
  "RemoteUrl": "https://github.com/nickfountainjones/mriml",
  "RemoteRef": "HEAD",
  "RemoteSha": "81c48bd47d47d2f78278f011f5a33beb5500663a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-13 06:06:20 UTC",
    "User": "root"
  },
  "Author": "Nick Fountain-Jones [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0001-9248-8493>),\nRyan Leadbetter [aut] (ORCID: <https://orcid.org/0000-0002-1942-3121>),\nGustavo Machado [aut] (ORCID: <https://orcid.org/0000-0001-7552-6144>),\nChris Kozakiewicz [aut],\nNick Clark [aut]",
  "Maintainer": "Nick Fountain-Jones <nick.fountainjones@utas.edu.au>",
  "MD5sum": "29dc521fd61e6cfe008318688b820481",
  "_user": "nickfountainjones",
  "_type": "src",
  "_file": "mrIML_2.2.0.tar.gz",
  "_fileid": "16e8b161ce48a4f48e267355df050818042a71466f290fe5f283bb2a945c6ffc",
  "_filesize": 2525704,
  "_sha256": "16e8b161ce48a4f48e267355df050818042a71466f290fe5f283bb2a945c6ffc",
  "_created": "2026-05-13T06:06:20.000Z",
  "_published": "2026-05-22T10:16:15.535Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77359818618,
      "time": 226,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6962837661"
    },
    {
      "job": 77359818277,
      "time": 238,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6962840200"
    },
    {
      "job": 77359818040,
      "time": 238,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6962830193"
    },
    {
      "job": 77359818365,
      "time": 245,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6962829444"
    },
    {
      "job": 77359817899,
      "time": 310,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6962783464"
    },
    {
      "job": 77359817624,
      "time": 174,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7158133964"
    },
    {
      "job": 77359817914,
      "time": 167,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6962822722"
    },
    {
      "job": 77359818691,
      "time": 164,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6962821916"
    },
    {
      "job": 77359818383,
      "time": 160,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6962821096"
    }
  ],
  "_buildurl": "https://github.com/r-universe/nickfountainjones/actions/runs/25781427766",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/nickfountainjones/mriml",
  "_commit": {
    "id": "81c48bd47d47d2f78278f011f5a33beb5500663a",
    "author": "Ryan Leadbetter <ryan.leadbetter@postgrad.curtin.edu.au>",
    "committer": "Ryan Leadbetter <ryan.leadbetter@postgrad.curtin.edu.au>",
    "message": "New CRAN submission\n",
    "time": 1763086023
  },
  "_maintainer": {
    "name": "Nick Fountain-Jones",
    "email": "nick.fountainjones@utas.edu.au",
    "login": "nickfountainjones",
    "uuid": 33707823,
    "orcid": "0000-0001-9248-8493"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "patchwork",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "recipes",
      "role": "Imports"
    },
    {
      "package": "rsample",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "tune",
      "role": "Imports"
    },
    {
      "package": "workflows",
      "role": "Imports"
    },
    {
      "package": "yardstick",
      "role": "Imports"
    },
    {
      "package": "flashlight",
      "role": "Imports"
    },
    {
      "package": "future.apply",
      "role": "Imports"
    },
    {
      "package": "MetricsWeighted",
      "role": "Imports"
    },
    {
      "package": "finetune",
      "role": "Imports"
    },
    {
      "package": "hstats",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "ape",
      "role": "Suggests"
    },
    {
      "package": "vegan",
      "role": "Suggests"
    },
    {
      "package": "hardhat",
      "role": "Suggests"
    },
    {
      "package": "ggrepel",
      "role": "Suggests"
    },
    {
      "package": "themis",
      "role": "Suggests"
    },
    {
      "package": "MRFcov",
      "role": "Suggests"
    },
    {
      "package": "lme4",
      "role": "Suggests"
    },
    {
      "package": "randomForest",
      "role": "Suggests"
    },
    {
      "package": "ggnetwork",
      "role": "Suggests"
    },
    {
      "package": "igraph",
      "role": "Suggests"
    },
    {
      "package": "tidymodels",
      "role": "Suggests"
    },
    {
      "package": "tidyverse",
      "role": "Suggests"
    },
    {
      "package": "parsnip",
      "role": "Suggests"
    },
    {
      "package": "gridExtra",
      "role": "Suggests"
    },
    {
      "package": "future",
      "role": "Suggests"
    },
    {
      "package": "generics",
      "role": "Suggests"
    },
    {
      "package": "missForest",
      "role": "Suggests"
    },
    {
      "package": "kernelshap",
      "role": "Suggests"
    },
    {
      "package": "shapviz",
      "role": "Suggests"
    }
  ],
  "_owner": "nickfountainjones",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-20",
      "n": 8
    },
    {
      "week": "2025-27",
      "n": 7
    },
    {
      "week": "2025-28",
      "n": 8
    },
    {
      "week": "2025-29",
      "n": 11
    },
    {
      "week": "2025-30",
      "n": 3
    },
    {
      "week": "2025-31",
      "n": 1
    },
    {
      "week": "2025-32",
      "n": 4
    },
    {
      "week": "2025-33",
      "n": 6
    },
    {
      "week": "2025-38",
      "n": 1
    },
    {
      "week": "2025-40",
      "n": 1
    },
    {
      "week": "2025-43",
      "n": 2
    },
    {
      "week": "2025-45",
      "n": 2
    },
    {
      "week": "2025-46",
      "n": 5
    }
  ],
  "_tags": [],
  "_stars": 10,
  "_contributors": [
    {
      "user": "nickfountainjones",
      "count": 128,
      "uuid": 33707823
    },
    {
      "user": "nfountainjones",
      "count": 111,
      "uuid": 22999971
    },
    {
      "user": "gustavo-etal",
      "count": 84,
      "uuid": 42280272
    },
    {
      "user": "cpkoza",
      "count": 12,
      "uuid": 17914053
    },
    {
      "user": "nicholasjclark",
      "count": 5,
      "uuid": 35205724
    },
    {
      "user": "rleadbett",
      "count": 2,
      "uuid": 61529093
    }
  ],
  "_userbio": {
    "uuid": 33707823,
    "type": "user",
    "name": "Nick Fountain-Jones",
    "description": "I’m a lecturer in public health at the University of Tasmania in the School of Medine interested in machine learning and genomics  "
  },
  "_downloads": {
    "count": 214,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mrIML"
  },
  "_devurl": "https://github.com/nickfountainjones/mriml",
  "_searchresults": 22,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mrIML.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/nickfountainjones/mriml",
  "_realowner": "nickfountainjones",
  "_cranurl": true,
  "_releases": [
    {
      "version": "2.1.0",
      "date": "2025-08-01"
    },
    {
      "version": "2.2.0",
      "date": "2025-11-21"
    }
  ],
  "_exports": [
    "%>%",
    "filterRareCommon",
    "mrBootstrap",
    "mrCoOccurNet",
    "mrCovar",
    "mrFlashlight",
    "mrIMLperformance",
    "mrIMLpredicts",
    "mrInteractions",
    "mrPdPlotBootstrap",
    "mrPerformancePlot",
    "mrShapely",
    "mrVip",
    "mrVipPCA",
    "readSnpsPed",
    "resist_components"
  ],
  "_datasets": [
    {
      "name": "mrIML_bird_parasites_LM",
      "title": "An example mrIML model fit to MRFcov::Bird.parasites",
      "object": "mrIML_bird_parasites_LM",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "mrIML_bird_parasites_RF",
      "title": "An example mrIML model fit to MRFcov::Bird.parasites",
      "object": "mrIML_bird_parasites_RF",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "cbind",
      "title": "A cbind variation that ignores objects with zero dimention",
      "topics": [
        "cbind"
      ]
    },
    {
      "page": "filterRareCommon",
      "title": "Filter rare response variables from the data",
      "topics": [
        "filterRareCommon"
      ]
    },
    {
      "page": "mrBootstrap",
      "title": "Bootstrap mrIML model predictions",
      "topics": [
        "mrBootstrap"
      ]
    },
    {
      "page": "mrCoOccurNet",
      "title": "Generate a MrIML co-occurrence network",
      "topics": [
        "mrCoOccurNet"
      ]
    },
    {
      "page": "mrCovar",
      "title": "Investigate partial dependencies of a covariate for mrIML JSDMs (Joint Species Distribution Models)",
      "topics": [
        "mrCovar"
      ]
    },
    {
      "page": "mrFlashlight",
      "title": "Convert mrIML object into a 'flashlight' object",
      "topics": [
        "mrFlashlight"
      ]
    },
    {
      "page": "mrIML_bird_parasites_LM",
      "title": "An example mrIML model fit to MRFcov::Bird.parasites",
      "topics": [
        "mrIML_bird_parasites_LM"
      ]
    },
    {
      "page": "mrIML_bird_parasites_RF",
      "title": "An example mrIML model fit to MRFcov::Bird.parasites",
      "topics": [
        "mrIML_bird_parasites_RF"
      ]
    },
    {
      "page": "mrIMLperformance",
      "title": "Calculate general performance metrics of a mrIML model",
      "topics": [
        "mrIMLperformance"
      ]
    },
    {
      "page": "mrIMLpredicts",
      "title": "Generates a multi-response predictive model",
      "topics": [
        "mrIMLpredicts"
      ]
    },
    {
      "page": "mrInteractions",
      "title": "Calculate and visualize feature interactions",
      "topics": [
        "mrInteractions"
      ]
    },
    {
      "page": "mrPdPlotBootstrap",
      "title": "Bootstrap Partial Dependence Plots",
      "topics": [
        "mrPdPlotBootstrap"
      ]
    },
    {
      "page": "mrPerformancePlot",
      "title": "Plot Model Performance Comparison",
      "topics": [
        "mrPerformancePlot"
      ]
    },
    {
      "page": "mrShapely",
      "title": "Generate SHAP (SHapley Additive exPlanations) Plots for Multiple Models and Responses",
      "topics": [
        "mrShapely"
      ]
    },
    {
      "page": "mrVip",
      "title": "Calculates and helps interpret variable importance for 'mrIML' models.",
      "topics": [
        "mrVip"
      ]
    },
    {
      "page": "mrVipPCA",
      "title": "Principal Component Analysis of mrIML variable importance",
      "topics": [
        "mrVipPCA"
      ]
    },
    {
      "page": "readSnpsPed",
      "title": "Conversion to single column per locus from plink file via LEA functionality",
      "topics": [
        "readSnpsPed"
      ]
    },
    {
      "page": "resist_components",
      "title": "Calculates resistance components from a list of pairwise resistance surfaces",
      "topics": [
        "resist_components"
      ]
    }
  ],
  "_pkglogo": "https://github.com/nickfountainjones/mriml/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/nickfountainjones/mriml/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "class",
    "cli",
    "clock",
    "codetools",
    "cpp11",
    "data.table",
    "diagram",
    "dials",
    "DiceDesign",
    "digest",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "finetune",
    "flashlight",
    "fontawesome",
    "fs",
    "furrr",
    "future",
    "future.apply",
    "GauPro",
    "generics",
    "ggplot2",
    "globals",
    "glue",
    "gower",
    "gtable",
    "hardhat",
    "highr",
    "hstats",
    "htmltools",
    "ipred",
    "isoband",
    "jquerylib",
    "jsonlite",
    "KernSmooth",
    "knitr",
    "labeling",
    "lattice",
    "lava",
    "lbfgs",
    "lifecycle",
    "listenv",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "MetricsWeighted",
    "mime",
    "mixopt",
    "modelenv",
    "nnet",
    "numDeriv",
    "parallelly",
    "parsnip",
    "patchwork",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "prodlim",
    "progressr",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "recipes",
    "rlang",
    "rmarkdown",
    "rpart",
    "rpart.plot",
    "rsample",
    "S7",
    "sass",
    "scales",
    "sfd",
    "shape",
    "slider",
    "sparsevctrs",
    "splitfngr",
    "SQUAREM",
    "stringi",
    "stringr",
    "survival",
    "tailor",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tinytex",
    "tune",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "warp",
    "withr",
    "workflows",
    "xfun",
    "yaml",
    "yardstick"
  ],
  "_vignettes": [
    {
      "source": "mrIML.Rmd",
      "filename": "mrIML.html",
      "title": "mrIML",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Fitting a mrIML model",
        "Model performance and comparison",
        "Interogating models",
        "Bootstrapping for uncertainty",
        "Checking for interactions"
      ],
      "created": "2025-05-02 01:38:24",
      "modified": "2025-05-08 03:10:43",
      "commits": 3
    }
  ],
  "_score": 6.85430604180108,
  "_indexed": true,
  "_nocasepkg": "mriml",
  "_universes": [
    "nickfountainjones"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.2.0",
      "date": "2026-05-13T06:09:27.000Z",
      "distro": "noble",
      "commit": "81c48bd47d47d2f78278f011f5a33beb5500663a",
      "fileid": "217f4be97ce87bff543a17af205c7f2fb4c72f69d06bceab0c82733b0a9100c1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nickfountainjones/actions/runs/25781427766"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.2.0",
      "date": "2026-05-13T06:09:30.000Z",
      "distro": "noble",
      "commit": "81c48bd47d47d2f78278f011f5a33beb5500663a",
      "fileid": "e770b0b995085b1863d14b14ac731465451427bd7241e48bfcb79bf872030cd1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nickfountainjones/actions/runs/25781427766"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.2.0",
      "date": "2026-05-13T06:09:01.000Z",
      "commit": "81c48bd47d47d2f78278f011f5a33beb5500663a",
      "fileid": "cf0b7f0da2d7955a5d53469026784dcbb0b4b879e66cc3b5c260bf11da3e0b2a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nickfountainjones/actions/runs/25781427766"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.2.0",
      "date": "2026-05-13T06:08:49.000Z",
      "commit": "81c48bd47d47d2f78278f011f5a33beb5500663a",
      "fileid": "46454e3c33954b861e371a50e63b3a17c6c58a57eefb473d7a3bb0431f00709d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nickfountainjones/actions/runs/25781427766"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.2.0",
      "date": "2026-05-13T06:07:55.000Z",
      "commit": "81c48bd47d47d2f78278f011f5a33beb5500663a",
      "fileid": "e07be65ab689dbaafb5b8029b9829682b6d400285a6dec325d8172180cf47958",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nickfountainjones/actions/runs/25781427766"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.2.0",
      "date": "2026-05-13T06:08:03.000Z",
      "commit": "81c48bd47d47d2f78278f011f5a33beb5500663a",
      "fileid": "1f61b5bcc64332dcb9b813fdb5c27677abd5514a09859f3870baa0c20b39b20e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nickfountainjones/actions/runs/25781427766"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.2.0",
      "date": "2026-05-13T06:07:53.000Z",
      "commit": "81c48bd47d47d2f78278f011f5a33beb5500663a",
      "fileid": "c6d7a13d6297e1f9fdf948d2d1f574a1c245012fc01347773dd80dfc26d847fb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nickfountainjones/actions/runs/25781427766"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.2.0",
      "date": "2026-05-22T10:15:55.000Z",
      "commit": "81c48bd47d47d2f78278f011f5a33beb5500663a",
      "fileid": "81ea5769dfe9a23100ed038f80aba60c2dd9498a563d616437b04570448852f5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/nickfountainjones/actions/runs/25781427766"
    }
  ]
}